PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010913389.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family C3H
Protein Properties Length: 593aa    MW: 62998.1 Da    PI: 8.1642
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010913389.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH29.71.1e-09169193226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     +++ C +++ t tC +G++CkF H+
  XP_010913389.1 169 GEKDCAHYMLTRTCTFGNSCKFDHP 193
                     7889********************8 PP

2zf-CCCH37.15.2e-12220246127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     ++++ C+++++t  Ck+G+rCkF+H++
  XP_010913389.1 220 PGEPDCPYYMKTQKCKFGSRCKFNHPK 246
                     5789*********************96 PP

3zf-CCCH39.77.9e-13272296327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     ++lC+f+a+tG Ck+G++CkF+H++
  XP_010913389.1 272 EPLCSFYAKTGKCKFGPNCKFHHPK 296
                     79*********************96 PP

4zf-CCCH37.83.3e-12350375126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     ++++ C+f+++tG CkyG++C+++H+
  XP_010913389.1 350 PGEADCPFYLKTGSCKYGATCRYNHP 375
                     57899********************9 PP

5zf-CCCH31.62.8e-10490509726
                     SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   7 rffartGtCkyGdrCkFaHg 26 
                     +++++tG Ck+G+rCkF+H+
  XP_010913389.1 490 HYYMKTGLCKFGERCKFHHP 509
                     59*****************8 PP

6zf-CCCH38.81.6e-12541564427
                     ---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                     ++C+f+++tGtCk+G +CkF H+p
  XP_010913389.1 541 VICSFYLKTGTCKFGTTCKFDHPP 564
                     68********************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.699167195IPR000571Zinc finger, CCCH-type
SMARTSM003560.018167194IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.77E-5168194IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-7169193IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.094219247IPR000571Zinc finger, CCCH-type
SMARTSM003569.5E-6219246IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-9221246IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.84E-6224250IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.8E-5225247IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.69269297IPR000571Zinc finger, CCCH-type
SMARTSM003563.6E-7269296IPR000571Zinc finger, CCCH-type
PfamPF006424.0E-10272296IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-6272297IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.0E-7274301IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.432349377IPR000571Zinc finger, CCCH-type
SMARTSM003567.4E-7349376IPR000571Zinc finger, CCCH-type
PfamPF006428.7E-10351375IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-5353376IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-4355374IPR000571Zinc finger, CCCH-type
SMARTSM003560.43487510IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.67E-5490512IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-7490509IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.652490511IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.0E-4491509IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.601537565IPR000571Zinc finger, CCCH-type
SMARTSM003562.6E-7537564IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.26E-5541564IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-9541564IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.5E-5542562IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 593 aa     Download sequence    Send to blast
MSNQIYNYSS SYGGGGGTSS FYSLRATNPY LSDGGSSRLS SVDSLAAADT GMYSDRMSSL  60
YSKSGDGSLR LSGSDIAGYG AAGSLSAAGK IGGGIGTAPA SRALFASSSL DPMVVGGAKR  120
SVEALYNQSI LGSHNTIGQS DAPFSSNSLV KRSRLETASN LPIYPQRPGE KDCAHYMLTR  180
TCTFGNSCKF DHPIWVPEGG IPDWKEIPLV PASESLPEKP GEPDCPYYMK TQKCKFGSRC  240
KFNHPKDKLN ASADEVGGEG TENSVLPERP SEPLCSFYAK TGKCKFGPNC KFHHPKDLKI  300
PPDGEDTDKM GEMESEKNDG SAGGDPKLAK AHVSITPALL HNSKGLPIRP GEADCPFYLK  360
TGSCKYGATC RYNHPDRNSF NPPLASALGQ AIMPSPATNL PFGVLDPAAS FLQNINLQSA  420
QASLGVIPTV YPQRPGEIEC DVRIDSILFV LGLLTASRAH LTLGPITRVA KNASLYTVSL  480
SLMLASFYSH YYMKTGLCKF GERCKFHHPI DRSAPMSDAK QAPQQNVKLT LAGLPRREGA  540
VICSFYLKTG TCKFGTTCKF DHPPPGEAIA MATSQGTGSG TGTGVFSTES GEN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010913389.10.0PREDICTED: zinc finger CCCH domain-containing protein 8-like isoform X1
SwissprotQ941Q31e-179C3H37_ARATH; Zinc finger CCCH domain-containing protein 37
TrEMBLD7T0Z40.0D7T0Z4_VITVI; Putative uncharacterized protein
STRINGVIT_19s0085g01180.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58163757
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.11e-165floral homeotic protein (HUA1)